| Name | Short Description |
|---|---|
phylogeny | Plugin for generating and manipulating phylogenies. |
diversity-lib | Plugin for computing community diversity. |
dada2 | Plugin for sequence quality control with DADA2. |
vsearch | Plugin for clustering and dereplicating with vsearch. |
types | Plugin defining types for microbiome analysis. |
cutadapt | Plugin for removing adapter sequences, primers, and other unwanted sequence from sequence data. |
quality-filter | Plugin for PHRED-based filtering and trimming. |
taxa | Plugin for working with feature taxonomy annotations. |
composition | Plugin for compositional data analysis. |
deblur | Plugin for sequence quality control with Deblur. |
rescript | Pipeline for reference sequence annotation and curation. |
fragment-insertion | Plugin for extending phylogenies. |
longitudinal | Plugin for paired sample and time series analyses. |
diversity | Plugin for exploring community diversity. |
sample-classifier | Plugin for machine learning prediction of sample metadata. |
feature-classifier | Plugin for taxonomic classification. |
quality-control | Plugin for quality control of feature and sequence data. |
metadata | Plugin for working with Metadata. |
vizard | Generalized microbiome data visualization. |
feature-table | Plugin for working with sample by feature tables. |
emperor | Plugin for ordination plotting with Emperor. |
alignment | Plugin for generating and manipulating alignments. |
demux | Plugin for demultiplexing & viewing sequence quality. |
stats | Plugin for statistical analyses. |